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Preprocessing Pipeline for fNIRS Data in Children

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Part of the book series: IFMBE Proceedings ((IFMBE,volume 76))

Abstract

Functional near-infrared spectroscopy (fNIRS) is a non-invasive neuroimaging technique, largely used in paediatric research. However, there is not a standardized and widely accepted protocol for fNIRS data processing with potential effects on the reliability and replicability of the obtained results. The present study is within this framework aiming at the identification of an adequate pre-processing pipeline to be used for the analysis of children fNIRS datasets. The performance of five different motion correction techniques, based on the principal component analysis and on the wavelet filtering, was evaluated by analyzing fNIRS data recorded in 22 typically developing children (mean age 11.4 years). The results showed that the wavelet analysis combined with a moving average filter achieved the best performance, suggesting that this technique might become a gold-standard approach for motion artifacts correction in fNIRS children’s datasets.

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References

  1. Scholkmann, F., et al.: A review on continuous wave functional near-infrared spectroscopy and imaging instrumentation and methodology. Neuroimage 85, 6–27 (2014)

    Article  Google Scholar 

  2. Gallagher, A., et al.: Near-infrared spectroscopy as an alternative to the Wada test for language mapping in children, adults and special populations. Epileptic Disord. 9(3), 241–255 (2007)

    Google Scholar 

  3. Crippa, A., et al.: The utility of a computerized algorithm based on a multi-domain profile of measures for the diagnosis of attention deficit/hyperactivity disorder. Front. Psychiatry 8, 189 (2017)

    Article  Google Scholar 

  4. Mauri, M., et al.: Light up ADHD: I. cortical hemodynamic responses measured by functional near infrared spectroscopy (fNIRS): special section on translational and neur. J. Affect. Disord. 234, 358–364 (2018)

    Article  Google Scholar 

  5. Grazioli, S., et al.: Light up ADHD: II. neuropharmacological effects measured by near infrared spectroscopy: is there a biomarker? J. Affect. Disord. 244, 100 (2019)

    Article  Google Scholar 

  6. McDonald, N.M., et al.: Infant brain responses to social sounds: a longitudinal functional near-infrared spectroscopy study. Dev. Cogn. Neurosci. 36, 100638 (2019)

    Article  Google Scholar 

  7. Pfeifer, M.D., Scholkmann, F., Labruyère, R.: Signal processing in functional near-infrared spectroscopy (fNIRS): methodological differences lead to different statistical results. Front. Hum. Neurosci. 11, 641 (2018)

    Article  Google Scholar 

  8. Cooper, R., et al.: A systematic comparison of motion artifact correction techniques for functional near-infrared spectroscopy. Front. Neurosci. 6, 147 (2012)

    Article  Google Scholar 

  9. Brigadoi, S., et al.: Motion artifacts in functional near-infrared spectroscopy: a comparison of motion correction techniques applied to real cognitive data. Neuroimage 85, 181–191 (2014)

    Article  Google Scholar 

  10. Hu, X., et al.: Comparison of motion correction techniques applied to functional near-infrared spectroscopy data from children. J. Biomed. Opt. 20(12), 126003 (2015)

    Article  Google Scholar 

  11. Hocke, L., et al.: Automated processing of fNIRS data—a visual guide to the pitfalls and consequences. Algorithms 11(5), 67 (2018)

    Article  Google Scholar 

  12. Selb, J.J., et al.: Effect of motion artifacts and their correction on near-infrared spectroscopy oscillation data: a study in healthy subjects and stroke patients. J. Biomed. Opt. 20(5), 056011 (2015)

    Article  Google Scholar 

  13. Robertson, F.C., Douglas, T.S., Meintjes, E.M.: Motion artifact removal for functional near infrared spectroscopy: a comparison of methods. IEEE Trans. Biomed. Eng. 57(6), 1377–1387 (2010)

    Article  Google Scholar 

  14. Virtanen, J., Noponen, T.E., Meriläinen, P.: Comparison of principal and independent component analysis in removing extracerebral interference from near-infrared spectroscopy signals. J. Biomed. Opt. 14(5), 054032 (2009)

    Article  Google Scholar 

  15. Zhang, Y., et al.: Eigenvector-based spatial filtering for reduction of physiological interference in diffuse optical imaging. J. Biomed. Opt. 10(1), 011014 (2005)

    Article  Google Scholar 

  16. Molavi, B., Dumont, G.A.: Wavelet-based motion artifact removal for functional near-infrared spectroscopy. Physiol. Meas. 33(2), 259 (2012)

    Article  Google Scholar 

  17. Wilcox, T., et al.: Using near-infrared spectroscopy to assess neural activation during object processing in infants. J. Biomed. Opt. 10(1), 011010 (2005)

    Article  Google Scholar 

  18. Zhang, X., et al.: Signal processing of functional NIRS data acquired during overt speaking. Neurophotonics 4(4), 041409 (2017)

    Article  Google Scholar 

  19. Cui, X., et al.: A quantitative comparison of NIRS and fMRI across multiple cognitive tasks. Neuroimage 54(4), 2808–2821 (2011)

    Article  Google Scholar 

  20. Homer2. https://homer-fnirs.org/. Accessed Mar 2019

  21. Chiarelli, A.M., et al.: A kurtosis-based wavelet algorithm for motion artifact correction of fNIRS data. Neuroimage 112, 128–137 (2015)

    Article  Google Scholar 

  22. Duncan, A., et al.: Measurement of cranial optical path length as a function of age using phase resolved near infrared spectroscopy. Pediatr. Res. 39(5), 889–894 (1996)

    Article  Google Scholar 

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Correspondence to Caterina Piazza .

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Piazza, C. et al. (2020). Preprocessing Pipeline for fNIRS Data in Children. In: Henriques, J., Neves, N., de Carvalho, P. (eds) XV Mediterranean Conference on Medical and Biological Engineering and Computing – MEDICON 2019. MEDICON 2019. IFMBE Proceedings, vol 76. Springer, Cham. https://doi.org/10.1007/978-3-030-31635-8_28

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  • DOI: https://doi.org/10.1007/978-3-030-31635-8_28

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-31634-1

  • Online ISBN: 978-3-030-31635-8

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