1. Guest Editors' Foreword

   • D. Gusfield
   • M.-Y. Kao

   Pages: 141 - 141

2. Parallel Biomolecular Computation: Models and Simulations

   • J. H. Reif

   Pages: 142 - 175

3. On the Linear-Cost Subtree-Transfer Distance between Phylogenetic Trees

   • B. DasGupta
   • X. He
   • J. Tromp

   Pages: 176 - 195

4. Evolutionary Trees and Ordinal Assertions

   • P. E. Kearney
   • R. B. Hayward
   • H. Meijer

   Pages: 196 - 221

5. Molecular Computing, Bounded Nondeterminism, and Efficient Recursion

   • R. Beigel
   • B. Fu

   Pages: 222 - 238

6. Simulating Boolean Circuits on a DNA Computer

   • M. Ogihara
   • A. Ray

   Pages: 239 - 250

7. The Performance of Neighbor-Joining Methods of Phylogenetic Reconstruction

   • K. Atteson

   Pages: 251 - 278

8. On the Intractability of Protein Folding with a Finite Alphabet of Amino Acids

   • J. Atkins
   • W. E. Hart

   Pages: 279 - 294

9. Mass Estimation of DNA Molecules and Extraction of Ordered Restriction Maps in Optical Mapping Imagery

   • L. Parida
   • D. Geiger

   Pages: 295 - 310

10. Approximation Algorithms for the Fixed-Topology Phylogenetic Number Problem

    • M. Cryan L. A. Goldberg
    • C. A. Phillips

    Pages: 311 - 329

11. An Algorithm for Identifying Similar Amino Acid Clusters among Different Alpha-Helical Coiled-Coil Proteins Using Their Secondary Structure

    • T. C. Ip
    • V. A. Fischetti
    • J. P. Schmidt

    Pages: 330 - 346

12. Computational Approaches to Drug Design

    • P. W. Finn
    • L. E. Kavraki

    Pages: 347 - 371

13. Computer Algebra Methods for Studying and Computing Molecular Conformations

    • I. Z. Emiris
    • B. Mourrain

    Pages: 372 - 402